BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB018F01LP1|AL427342
(700 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig668 1305 0.0
>3x_Contig668
Length = 3128
Score = 1305 bits (656), Expect = 0.0
Identities = 690/702 (98%), Gaps = 2/702 (0%)
Strand = Plus / Minus
Query: 1 tctctctctctcggcttaattgaagtaagtagtagatttcaatagatatagtcgagcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tctctctctctcggcttaattgaagtaagtagtagatttcaatagatatagtcgagcctt 661
Query: 61 aaatctacaccgaggctgctgtaagatgtgtaagttttcgaacaataaggtcagtgaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaatctacaccgaggctgctgtaagatgtgtaagttttcgaacaataaggtcagtgaatc 601
Query: 121 agggagtatacggcccaacacagactctaacatgcactatgtaaccggaagtttatacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agggagtatacggcccaacacagactctaacatgcactatgtaaccggaagtttatacaa 541
Query: 181 tcgaatctactctgaaatccaacggatgttctgggcaccactatcggagattgggttttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tcgaatctactctgaaatccaacggatgttctgggcaccactatcggagattgggttttc 481
Query: 241 atttacagagaacctgttaaatattgttgaatttcaaccttttctaaggttttacgaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atttacagagaacctgttaaatattgttgaatttcaaccttttctaaggttttacgaaat 421
Query: 301 actttcaaatcagacaacgcttgcttaatgagaaagcttgtcatgttccaattgttagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 actttcaaatcagacaacgcttgcttaatgagaaagcttgtcatgttccaattgttagtg 361
Query: 361 tcagtgtataaatataggtgcattttctcactcactttggtattaaatacgacaggcgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcagtgtataaatataggtgcattttctcactcactttggtattaaatacgacaggcgca 301
Query: 421 accyacyacttagaggaaaaggaaaggaaaccagccctgataagtaagaaagacggggac 480
||| || |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 300 acctactacttagaggaaaaggaaaggaaaccagctctgataagtaagaaagacggtgac 241
Query: 481 agnagtwattactaataattaayattaatgcttgagaaattgagtagttacttcacggga 540
|| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 240 agtagtaattactaataattaatattaatgcttgagaaattgagtagttacttcacggga 181
Query: 541 ccagagttgtctgatccattgccaagccggtcatttgatccatcttct-gaaaacttgta 599
|||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct: 180 ccagagttgtctgatccattgctaagctggtcatttgatccatcttctggaaaacttgta 121
Query: 600 ctatagacatttgcatgaagcct-tgatatcttttgtggngtatcaattcattctatatc 658
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 120 ctatagacatttgcatgaagcctatgatatcttttgtggtgtatcaattcattctatatc 61
Query: 659 catttgtggtgccaaaacttaacgaatggttcttcaaagagc 700
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 catttgtggtgccaaaacttaacgaatggttcttcaaagagc 19
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5100
Number of Sequences: 1807
Number of extensions: 5100
Number of successful extensions: 118
Number of sequences better than 1.0e-20: 1
length of query: 700
length of database: 10,358,551
effective HSP length: 16
effective length of query: 684
effective length of database: 10,329,639
effective search space: 7065473076
effective search space used: 7065473076
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)